Success Stories

eDNA in the Peruvian Amazon

Uncovering 675 species in the Peruvian Amazon for the same cost and effort as a river dolphin survey

eDNA in the Peruvian Amazon

Project Snapshot

675 species uncovered through aquatic eDNA metabarcoding
100 non-aquatic species detected
Years’ worth of data gathered from a single trip
Millions of dollars of additional species intelligence for $0
Detailed diversity patterns plus locational and frequency data along nearly 1000km of river length


When WWF Peru approached us to help survey six aquatic species including Amazon manatees, pink river dolphins and migratory catfish along the Marañon river in the Northern Peruvian Amazon as part of their Healthy Rivers programme, we knew that our aquatic eDNA service would prove an invaluable resource. Traditional methods would have meant conducting separate surveys for each species, but with eDNA they could all be surveyed together, along with the rest of the vertebrate fauna – saving money and time. Just three trips later, we delivered a comprehensive set of data to WWF covering a vast array of aquatic and non- aquatic species, including 375 fish, 155 mammals and 65 birds.

Project Date
Project Length
Sample Type
Group Targeted
Freshwater Aquatic

What the Client Says

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With NatureMetrics’ innovative aquatic eDNA service, we were able to fully achieve our goal of determining the spatial distributions of six culturally and commercially important aquatic species along the Marañon river, and we exceeded our goal by also detecting hundreds of additional vertebrate species, which we can now start to take into account in designing a sensitive index of basin health.

Without eDNA and NatureMetrics, we would have been restricted to visual surveys for river dolphins alone, itself requiring more field time than the eDNA survey. We would have been limited to opportunistic interviews for the other five target species, which are less reliable, auditable, and systematic. The hundreds of other species detections would not have been possible at all.

Brenda Toledo, Coordinator of Amazonian Healthy Waters Programme, WWF Peru

Brenda Toledo, Coordinator of Amazonian Healthy Waters Programme, WWF Peru

The Challenge

Sampling In Vast Landscapes

This was a vast, landscape-level survey, stretching from the Andean slopes in the east to the Brazilian border in the west.

To survey this length of river for just a few species using traditional techniques would have taken many more person hours, requiring multiple trips and resulting in less reliable, auditable and systematic data.”

Brenda Toledo, WWF Peru

Our Role

Sampling Techniques Made Easy

We worked with two of the local WWF Peru team to train them up on our aquatic eDNA sampling protocol, which is simple and quick to execute by anyone in the field. Over three separate trips, they collected samples at 40 points along the Maranon river.

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The Findings

The mammals we found included 100 nonaquatic species:

  • Small mammals (e.g. many species of rodents and opossums)
  • Large ungulates such as tapirs, deer and peccaries
  • Top predators including jaguar and ocelot
  • Other terrestrial species such as giant anteaters and armadillos
  • Arboreal species including almost all the monkey species known in the area
  • 25 species of bat

Over half the species detected were fish – which is what we would expect as fish shed lots of DNA and the Amazon has the highest diversity of freshwater fish in the world.

The Impact

An Invaluable Resource for Measuring and Protecting Biodiversity

The eDNA analysis conducted in our labs provided a comprehensive dataset of vertebrate fauna of the rivers and surrounding forests, including locational, occupancy and frequency data and diversity patterns for 675 species. This included endangered species like Jaguars and Giant River Otters and hundreds of fish species that are hugely important for the livelihoods of local communities but are virtually impossible to survey in any other way.

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